Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015816509.1_cds_XP_016498831.1_12813
CDS Infomation

[gene=LOC107817499] [db_xref=GeneID:107817499] [protein=probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic] [protein_id=XP_016498831.1] [location=join(14391..15121,15217..15301,17308..17742,17827..17880,17983..18048,18159..18254,18337..18465,18544..18596,18927..19122,19759..19873,19956..20230,20871..20954,21046..21158,21234..21483,21725..21901)] [gbkey=CDS]
Sequence

ATGAGTCTTAGTTCAGTAAGAATGTCTTTTTCTACAGCTAACAATTGTATATCAGCAAGT
TTCACTCATCCAAACCCCAACATTCAACTGCAGAGTTCATTCATAATCAAATTCCCACAT
CAAAAAAGTTTCAAAAATTCCACTTTTCATAGGAATTTCAGAAGAAGATCACATTTTTAT
CATTGCCCATGTGCAGTTCTTGGAAAATGGAAGTCCAAGAATGAGGGGGAAGGAAGCAAT
AATGAGGATTTTGTGACTAGGGTTTTGAAAGAAAACCCTAGCCAAGTGGAACCCAAATAC
AAAATTGGGAATAAACTTTATACCCTCAAGGAAAAAGAGGATTTGGGTAAGAAGGGTTTG
AATGGTGGCATTATGGAGATACTAAAAAGGTTGAATTTTAAAGGATTAGTGAAGAATGGA
AGTGACGAGGGTAGTTTAGTAAATTCAGAGAATGTGTATTTGAAGGACATTTTGAGGGAG
TATAAGGGGAAGTTATATGTCCCTGAGCAAATTTTTGGTGCTAATTTATCTGAAGAAGAG
GAGTTCGAAAACAATGTTGAGGATTTGCCTAAGATGAAGTTGGAGGATTTTCAAAAGTAC
ATGAAATTTGATAAGATAAAGCTGTTGACTTTTAAAGAAGATACTGGAGCTTCTTTGGGA
TTTGGATTTAGAGATTTTGTTGTTGAGTTGAAGGATATACCAGGAGAAAAGAGCTTGCAG
AGAACTAAATGGGCAATGAAGCTGGATCAAAATCAAGCTCAGGGTTTACTAGAGGAGTAC
ACGGGGCCAAGATATGAAGTCGAGAAGCAAATGATGTCTTGGGTGGGAAAATTACCAGAG
TATCCTAATCCAGCTGCATCGAAGATATCAAGCAGAGTAGTGGTAGAACTTGGAATGCTG
ACTGCTGTAATGATTGCTGCTGCGGTGATTGTGGGTACATTCCTGGCTTCGGCTGTGTTT
GCTGTGACAAGCTTTGTCTTTGCTGTGGCCGTGTATGTCATGTGGCCTGTGGCCAAACCA
TTTCTTAAGCTGTTCTTTGGTCTCATCTTTGGTATCTTAGAAAGAGTTTGGGATAAGGTT
GTTGATGCTTTTACTGATGGAGGAATTTTCTCAAAGTTGTATGAAGTGTACACTTTTGGT
GGTGTCTCTGCCAGTATTGAGATGCTGAAACCAATCATGCTTGTTTTTTTAACTATGGTT
CTTCTTGTCCGGTTCACTCTTTCACGAAGACCTAAGAACTTCAGAAAGTGGGATATATGG
CAAGGCATAGAATTCTCTCAGTCTAAGCCACAAGCACGTGTTGATGGTTCAACTGGAGTC
ACATTTAGTGATGTAGCTGGGATTGAGGAAGCAGTTGAAGAACTTCAAGAGTTGGTAAGA
TACTTGAAGAATCCTGAACTATTTGATAAAATGGGGATCAAGCCGCCCCATGGAGTACTT
CTGGAGGGACCTCCCGGATGTGGCAAGACCCTGGTTGCCAAAGCAATAGCAGGTGAAGCT
GGTGTTCCATTTTATCAAATGGCTGGTTCTGAATTTGTGGAAGTTCTAGTTGGTGTTGGT
TCTGCTCGTATTAGAGATTTGTTCAAGAGAGCCAAGGTGAATAGACCGTCAGTTATCTTC
ATCGACGAAATCGATGCACTCGCAACAAGGCGTCAAGGAATATTTAGTGAATCAACTGAC
CACCTCTATAATGCGGCAACTCAAGAAAGGGAAACTACTCTGAACCAGTTATTGATCGAA
CTTGATGGATTTGATACTGGTAAAGGCGTTATATTCTTGGGAGCCACAAATCGAAGGGAT
TTATTAGATCCCGCTCTTCTTCGTCCTGGTAGATTTGATCGCAAGATAAGAATTCGGCCT
CCCAATGCAAAAGGAAGATTGGACATTTTGAAAGTACATGCACGCAAAGTTAAATTATCA
GATACTGTTGATTTGGCTAGTTATGCCCAAAATTTACCTGGATGGTCAGGTGCAAAGCTA
GCTCAGCTTCTCCAGGAGGCTGCTCTGGTAGCAGTCAGGAGAGGGCATAATTCAATTCTT
CATTCAGATATGGATGATGCAGTTGACCGACTTACGGTAGGACCTAAGCGGGTTGGGGTT
GAGTTGGGTCATCAGGGACAGTGTCGTCGAGCTGTTACTGAAGTGGGGACTGCATTGACT
TCTCACCTTTTAAGGCATTATGAGAATGCAAACGTTGAGCGCTGTGACAGAATATCTATC
AATCCACGTGGCCAGACCCTGTCCCAAGTTGTGTTCAACCGTCTTGATGATGAGTCGTAC
ATGTTTGAGCGGCTACCACAGTTGCTTCACCGCCTTCAGGTATTTCTTGGAGGGAGAGCT
GCTGAAGAAGTCATTTACGGACGTGATACTTCAAGAGCATCTGTAAACTACCTTGCTGAT
GCGTCTTGGCTTGCTCGTAAGATAATCACAATATGGAATATGGAAAATCCAATGGCCATA
CACGGAGAACCTCCCCCCTGGAGAAAGAAAGTGAGGTTTGTGGGCCCACGGCTTGACTTT
GAAGGATCGCTATATGATGATTATGACTTAATTGAGCCTCCTACCAACTTTGATTTGGAT
GATGATGTTGCTAAGAAGACAGAAGAGCTCATACGTGATATGTACGGGAAGACCGTCTCT
CTGCTTAGGCAGCACGATGCTGCTTTGCTCAAAACAGTGAAGGTTCTTCTGAATCACAAA
GAAATCAATGGAGATGAAATCGACTTAATCCTGAGCCACTATCCGCAAAATACACCCACA
AGTCTACTGCTGGAGGAGAGAGATCCGGGGAGTCTTCCATTTTTGAACGAAAAACAAGAA
CAGCATAATACCGTTGAGTACAGTCTGTTTAATTCATGA

Peptide Sequence

PEP ID

XP_016498831.1
PEP Infomation

PREDICTED: probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic [Nicotiana tabacum]
Sequence

MSLSSVRMSFSTANNCISASFTHPNPNIQLQSSFIIKFPHQKSFKNSTFHRNFRRRSHFY
HCPCAVLGKWKSKNEGEGSNNEDFVTRVLKENPSQVEPKYKIGNKLYTLKEKEDLGKKGL
NGGIMEILKRLNFKGLVKNGSDEGSLVNSENVYLKDILREYKGKLYVPEQIFGANLSEEE
EFENNVEDLPKMKLEDFQKYMKFDKIKLLTFKEDTGASLGFGFRDFVVELKDIPGEKSLQ
RTKWAMKLDQNQAQGLLEEYTGPRYEVEKQMMSWVGKLPEYPNPAASKISSRVVVELGML
TAVMIAAAVIVGTFLASAVFAVTSFVFAVAVYVMWPVAKPFLKLFFGLIFGILERVWDKV
VDAFTDGGIFSKLYEVYTFGGVSASIEMLKPIMLVFLTMVLLVRFTLSRRPKNFRKWDIW
QGIEFSQSKPQARVDGSTGVTFSDVAGIEEAVEELQELVRYLKNPELFDKMGIKPPHGVL
LEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNRPSVIF
IDEIDALATRRQGIFSESTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLGATNRRD
LLDPALLRPGRFDRKIRIRPPNAKGRLDILKVHARKVKLSDTVDLASYAQNLPGWSGAKL
AQLLQEAALVAVRRGHNSILHSDMDDAVDRLTVGPKRVGVELGHQGQCRRAVTEVGTALT
SHLLRHYENANVERCDRISINPRGQTLSQVVFNRLDDESYMFERLPQLLHRLQVFLGGRA
AEEVIYGRDTSRASVNYLADASWLARKIITIWNMENPMAIHGEPPPWRKKVRFVGPRLDF
EGSLYDDYDLIEPPTNFDLDDDVAKKTEELIRDMYGKTVSLLRQHDAALLKTVKVLLNHK
EINGDEIDLILSHYPQNTPTSLLLEERDPGSLPFLNEKQEQHNTVEYSLFNS

Transcript Sequence

Gene sequence data has not been registered.